GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| BLCA | cis | rs425105 | 1 | rs313839 | chr19:47221557 | FKRP | chr19:47249303-47261832:+ | 0.4 | 4.36 | 1.68E-5 | Type 1 diabetes |
| BLCA | cis | rs2243480 | 1 | rs316304 | chr7:65616894 | CCT6P1 | chr7:65216092-65228661:+ | 0.35 | 4.71 | 3.52E-6 | Diabetic kidney disease |
| BLCA | cis | rs2243480 | 1 | rs316307 | chr7:65570171 | CCT6P1 | chr7:65216092-65228661:+ | 0.33 | 4.68 | 3.98E-6 | Diabetic kidney disease |
| BLCA | cis | rs2243480 | 1 | rs316312 | chr7:65596491 | CCT6P1 | chr7:65216092-65228661:+ | 0.33 | 4.56 | 6.79E-6 | Diabetic kidney disease |
| BLCA | cis | rs2243480 | 1 | rs316313 | chr7:65593548 | CCT6P1 | chr7:65216092-65228661:+ | 0.33 | 4.56 | 6.79E-6 | Diabetic kidney disease |
| BLCA | cis | rs2243480 | 1 | rs316315 | chr7:65591205 | CCT6P1 | chr7:65216092-65228661:+ | -0.3 | -4.31 | 2.12E-5 | Diabetic kidney disease |
| BLCA | cis | rs2243480 | 1 | rs316317 | chr7:65613637 | CCT6P1 | chr7:65216092-65228661:+ | 0.35 | 4.71 | 3.52E-6 | Diabetic kidney disease |
| BLCA | cis | rs2243480 | 1 | rs316318 | chr7:65612904 | CCT6P1 | chr7:65216092-65228661:+ | 0.35 | 4.71 | 3.52E-6 | Diabetic kidney disease |
| BLCA | cis | rs2243480 | 1 | rs316321 | chr7:65611613 | CCT6P1 | chr7:65216092-65228661:+ | 0.35 | 4.71 | 3.52E-6 | Diabetic kidney disease |
| BLCA | cis | rs2243480 | 1 | rs316322 | chr7:65611233 | CCT6P1 | chr7:65216092-65228661:+ | 0.36 | 4.73 | 3.17E-6 | Diabetic kidney disease |
| BLCA | cis | rs2243480 | 1 | rs316325 | chr7:65609518 | CCT6P1 | chr7:65216092-65228661:+ | 0.35 | 4.71 | 3.52E-6 | Diabetic kidney disease |
| BLCA | cis | rs2243480 | 1 | rs316326 | chr7:65609453 | CCT6P1 | chr7:65216092-65228661:+ | 0.35 | 4.71 | 3.52E-6 | Diabetic kidney disease |
| BLCA | cis | rs2243480 | 1 | rs316327 | chr7:65609201 | CCT6P1 | chr7:65216092-65228661:+ | -0.3 | -4.21 | 3.13E-5 | Diabetic kidney disease |
| BLCA | cis | rs2243480 | 1 | rs316329 | chr7:65608416 | CCT6P1 | chr7:65216092-65228661:+ | 0.32 | 4.49 | 9.37E-6 | Diabetic kidney disease |
| BLCA | cis | rs2243480 | 1 | rs316330 | chr7:65605372 | CCT6P1 | chr7:65216092-65228661:+ | 0.36 | 4.95 | 1.13E-6 | Diabetic kidney disease |